rs52204452 SNP Detail

Summary

• ID
  rs52204452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164249026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGCCAC CATGTGGTTG
  CTGGGAGTTG AACTCAGAAC CTCTGGAAGA GCAGCCAGGG CTCTTAACTG CTGAGCCGTC
  TCTCCTACCC CTTGACTGTT ATTTTTGTTG TTGATGTTGG TGGTGGTTCT GGTGCTGGTG
  GTGATACTGG TGCTGTGTGG ATGTATAGAT GCCACGATTC CTGTGGAGGT AAGAGGATAA
  Y
  GTGTGCAGTT AGGTGTACAG TTGGTTCTCT TCCTCCTTTT GATGGGTTCT GGGCATTGAA
  GTCAAGTTAT CATGCTTGCC TCAGCAAGCC TTTTATCCAC TGAGCCACCT GTTACTTAAG
  AACTAATCTG GGGCTGGAGA GACTACTCAG GGTTAAGAGC ACTGGTGGCT GCTCTTCCAG
  AGGACCTGAG TTCAATTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605789	CHEV_2_164232606	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52204452					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164249026 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Matn4	matrilin 4			1946 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569600	regulatory region 569600			1713 bp distal
Rr569601	regulatory region 569601			570 bp proximal
Rr569602	regulatory region 569602			792 bp proximal
Tssr21580	transcription start site region 21580			1809 bp downstream