rs52198642 SNP Detail

Summary

• ID
  rs52198642
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135751487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCAGGACAGC CAGGACTACA TAAAAAGACC CTGTCTCAAA
  TAGATGGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA
  T
  AGACAGACAG ATAGAAGCTT TGGCTCACTG ATACAATGTT TGCTTAGCTT GTAGGAAGTC
  CTGACTGCCA TCTCCTTTCC TTACACAAAG AATAACAAAA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147556042	ENSMUSSNP5523068	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52198642					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135751487 () rs orientation: forward

Symbol	Name	Function Class
Gm68304	predicted gene, 68304	within coordinates
Rr602241	regulatory region 602241	1975 bp distal
Rr602242	regulatory region 602242	1326 bp proximal