rs52198069 SNP Detail

Summary

• ID
  rs52198069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTATAA CCTCAGCACT
  CAGAAGACTG AGGCAGGATT ATAACTTCAA AGTCAGCAGG GCCTATAAAG CAAGACTTCT
  CTCTCCTGCC CTCCCCCAGG GAAAAACAAA AAAAGAAATC CCTCTTTCTG TGTGCACATA
  TATGTATGTA TTTATGTATG TGTGTATATA TGTATGTATG TAATGTATGT ATATACTAAT
  W
  GATTTCTCTT AGTTCCCTCC TTCCCGATTT TGCTGCTGTT GTTTTCATTC TGTAGCCCAG
  GCTGTCCTGG AGCTCACTCT ATAGATCAGG CTGCCCTTGA ACTCAGAGAT CCACACCCAG
  CTCCCCCCCC TTTTTTTCTT TTGTAACCCA GTCTCACCTT GAATTCATTT TATAGGTGAG
  GAAGACCCTA CCTTCACCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148092206	ENSMUSSNP1423687	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320584257	CHEV_2_156941133	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52198069					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957317 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	437 bp distal
Rr568436	regulatory region 568436	1557 bp proximal
Rr568437	regulatory region 568437	1730 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27142	transcription start site region 27142	1992 bp upstream
Tssr27143	transcription start site region 27143	1071 bp upstream