rs52197254 SNP Detail

Summary

• ID
  rs52197254
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147897585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAATATCCAG AAATTCCACC CTCCAATTCT TGTCCCAGGA
  ATTGGATGTC AGGGTTTTTT TTTTGTTTTT GTTTTATTAG GTATTTATTT CATTTACATT
  C
  CCAATGCTAT CCCAAAAGTC CCCCACATGC TCCCCCACCC ACTCCCCCAC CCACCCACTC
  CCACTTCTTG GCCCTGGCAT TCCCCTGTAC TGAGGCATAT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147983159	ENSMUSSNP6122783	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52197254					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147897585 () rs orientation: forward

Symbol	Name	Function Class
Rr367778	regulatory region 367778	192 bp upstream
Rr398847	regulatory region 398847	1270 bp downstream
Rr398848	regulatory region 398848	1377 bp upstream
Rr604504	regulatory region 604504	1476 bp proximal
Rr604505	regulatory region 604505	1622 bp proximal
Tssr44549	transcription start site region 44549	1543 bp downstream