rs52196549 SNP Detail

Summary

• ID
  rs52196549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83105501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAATAACA GTGAAAGATA TGCATTTACC AATAAGATGC
  CAGAGCTTAG TTTTCTGGGT GTTTGTTTGC TTGGTTGATT GGTTTGGTTT TGCTTGGCTT
  K
  GCTTTGCTTT GCTTCTTTTT ATAGCTCCCT ACACTCAATG TATCCAGACA GTGTTCTCAT
  ATAGTTATCA AATGTTGAAA TTATTGATCA AACAATCAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145303817	ENSMUSSNP1937697	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322735855	CHEV_8_84902771	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52196549					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83105501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			182 bp downstream
Tssr81958	transcription start site region 81958			199 bp downstream
Tssr81959	transcription start site region 81959			1208 bp downstream
Tssr81960	transcription start site region 81960			1393 bp downstream
Tssr81961	transcription start site region 81961			1429 bp downstream