rs52191330 SNP Detail

Summary

• ID
  rs52191330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153648189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT CTCTCTCTCT CTCCCTCCCT
  Y
  CCACCCTCCC TCCTTCCGTG TGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136115259	ENSMUSSNP1123827	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321031888	CHEV_3_153605516	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52191330					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153648189 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	1428 bp proximal
D3Mit88	DNA segment, Chr 3, Massachusetts Institute of Technology 88	1444 bp distal
Rr587801	regulatory region 587801	415 bp proximal
Tssr36252	transcription start site region 36252	1873 bp downstream
Tssr36253	transcription start site region 36253	1909 bp downstream