rs52188826 SNP Detail

Summary

• ID
  rs52188826
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122211811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCAACGGA TAGACTTTCC TTTTTCTTTC TGTCTTTCTT
  TCTTTTTTTC AAAAACACAA AGTTCCTCAA ATTTACTGTT TTGTTTTTGT CTTTGTTTTT
  S
  TTTTTGTTTT TTTAATACTT TGTTGTTAAA GCTGTCTGTG GATGTTTTTA CTTTGGCCAT
  TCTGTAGCTG CAGAGTCTTT TGATTCGTTT AAAGACATA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320911463	CHEV_3_122121080	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52188826					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122211811 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	1595 bp upstream
Cpgi13768	CpG island 13768	1391 bp proximal
Rr397985	regulatory region 397985	1419 bp upstream
Rr584325	regulatory region 584325	649 bp proximal
Rr584326	regulatory region 584326	1179 bp proximal
Rr584327	regulatory region 584327	1627 bp proximal
Tssr31494	transcription start site region 31494	1577 bp upstream
Tssr31495	transcription start site region 31495	1610 bp upstream
Tssr31496	transcription start site region 31496	1631 bp upstream
Tssr31497	transcription start site region 31497	1704 bp upstream
Tssr31498	transcription start site region 31498	1823 bp upstream