rs52184286 SNP Detail

Summary

• ID
  rs52184286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151369536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGCAGAAA CTTATGGCAA AGAAGGCCCA TGAAGGTCAC
  TGAAGCACAC ACACAGAGAT TACACACACA CACACACACA CACACACACA CACACACACA
  Y
  GGTAAATATA TGGTATATAT ATATATATTT GTAGTGTATA TATGGTATAT ATAGTATATA
  TACTATATAG AGAGTATATG TGGTATATAA GTATATATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148067340	ENSMUSSNP2399813	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321432161	CHEV_4_150659188	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52184286					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151369536 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605556	regulatory region 605556	1481 bp distal
Rr605557	regulatory region 605557	1821 bp distal
Rr605558	regulatory region 605558	575 bp proximal
Rr605559	regulatory region 605559	1000 bp proximal