rs52184268 SNP Detail

Summary

• ID
  rs52184268
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106423354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCCATTA TCTTATTTTA TAAGTATGGG TGTTTTGGCT
  GCATATATGT TTATGCTCCT GTGTGTGTGT GCGTGTGTGT GTGTGTGTGT GTGTATATGT
  G
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTTGGTGTCA GAGGCTAGAA
  GAGGGTGTCA GGTCCTCTGA AACTAGAGTT ATAGACAGT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135579846	ENSMUSSNP3628136	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52184268					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106423354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				Noncoding-Transcript-Variant
Rr582852	regulatory region 582852			721 bp distal
Tssr34966	transcription start site region 34966			1951 bp upstream
Tssr34967	transcription start site region 34967			63 bp downstream
Tssr34968	transcription start site region 34968			97 bp downstream
Tssr34969	transcription start site region 34969			233 bp downstream
Tssr34970	transcription start site region 34970			977 bp downstream