rs52180083 SNP Detail

Summary

• ID
  rs52180083
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144922854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGCAGGTGGA TTTCTGAGTT CAAGGCCAGC CTGGTCTACA
  AAGTGAGTTC CAGGACAGCC AGGGCTATAC AGAGAAACCC TGTCTCGAAA ACACAAAAAA
  M
  AAACAAACAA ACAAACAAAC AAACAAACAA AAAAAAGAGA TGAGCCTGGA AGGTATAGCT
  CAGTAGTAGA GTCCATGTGT GATGCTGGAT TAAGTCCCTA G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147848468	ENSMUSSNP5397785	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52180083					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144922854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15267	CpG island 15267	943 bp distal
Rr398672	regulatory region 398672	1066 bp downstream
Rr604319	regulatory region 604319	1290 bp distal
Rr604320	regulatory region 604320	1915 bp distal
Rr604321	regulatory region 604321	789 bp distal
Rr604322	regulatory region 604322	1176 bp distal
Rr604323	regulatory region 604323	411 bp proximal
Tssr44481	transcription start site region 44481	1320 bp upstream
Tssr44482	transcription start site region 44482	1291 bp upstream
Tssr44483	transcription start site region 44483	1240 bp upstream
Vps13d	vacuolar protein sorting 13D	1279 bp upstream