rs52177658 SNP Detail

Summary

• ID
  rs52177658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151766856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTTACA CAATGGAGTT
  CTACTCAGCT ATTAAAAATA ATGATTTATG AAATTCTGCT GGTAACATCA GCTCCAAGAG
  ATGTGGCGCC CCCTTTTGGC CTCAACCAGC ACCTGCACAC ATGTGCACAC CTACATACAG
  ACACCCCCTT ATATGCATAC ATACACAGGC TTAGCACAGC CCTGTTATAT ACAAATGCAC
  R
  CACACATAGG CTTAGCACAG CCCTGTTTCA CACATACACA CACACAGGGT TAGTGCAGCC
  CTGTTGTAAC ACACACACAC ACACACACAC ACACACACAC CTCATACATA CTTACTTCAA
  AAGGAAAATG TCAAGAATAG GGAAGGCAGC AAAGATTTTG CTTTCTGCCT AGATCAGAAA
  CTATGTATGT GGCTGAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148075599	ENSMUSSNP2415999	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52177658					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151766856 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Gm38442	predicted gene, 38442			within coordinates
Rr605620	regulatory region 605620			97 bp distal
Rr605621	regulatory region 605621			891 bp proximal