rs52176614 SNP Detail

Summary

• ID
  rs52176614
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6262420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACACACA CAGAGATAGA CATACAGAGA GAGACAGAGA
  CAGAGAGAAA GAGTGACAGA GAGAAAGACA CACACACACA GAGACAGACA GACAGACACA
  C
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AACGTACCAT TGTAATATTG
  TTTTGTTTTA GGGGCAAGGC TCCACCGTGG CATGATCTT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146277245	ENSMUSSNP1224465	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52176614					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6262420 () rs orientation: forward

Symbol	Name	Function Class
A230108P19Rik	RIKEN cDNA A230108P19 gene	within coordinates
Gm13383	predicted gene 13383	within coordinates
Gm46730	predicted gene, 46730	within coordinates
Rr551353	regulatory region 551353	1287 bp distal
Rr551354	regulatory region 551354	549 bp distal
Tssr22443	transcription start site region 22443	1321 bp upstream