rs52175450 SNP Detail

Summary

• ID
  rs52175450
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81817086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTAAAAATGA AAAAGAAAAA AGACAACATC TCTCTGTCTC
  TCTGTCTCTC TCTGTCTCTC TGTCTCTCTG TCTCTGTCTG TCTGTCTGTC TCTCTCTCTC
  W
  CTCTCTCTCT CTCTCTCTCT CTCTCTCACA CACACACACA CACACACACG AGTTTATACA
  TTTCATGAAA AATATTATGA ACCAAATTTG CTCACTTTTT A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135398634	ENSMUSSNP4119901	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52175450					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81817086 () rs orientation: forward

Symbol	Name	Function Class
Gm9989	predicted gene 9989	within coordinates
Rr375244	regulatory region 375244	81 bp upstream
Rr578719	regulatory region 578719	316 bp proximal