rs52175005 SNP Detail

Summary

• ID
  rs52175005
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158112605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATATACCA GAACACATGC CCATGTGCAC ATGCATGCAC
  ACACATACAC ACAGTCCACA CACATAGGAC ATACATATAT ACACATACAC ATGTGCACAT
  W
  CATGTACATG CACACACGTG TGCAAATAGA CACATTCACC TGTACCTGTA CAGAAACATA
  CACTTGATCA CACAGGAGGT ACATCTGGAC CAGTGTGTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148112708	ENSMUSSNP7041032	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320588374	CHEV_2_158096421	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52175005					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158112605 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	Intron
Rr568716	regulatory region 568716	205 bp distal