rs52173958 SNP Detail

Summary

• ID
  rs52173958
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:55796696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATGCCT GAATAAGCTG
  GGTGTGTGGT AGTATATGCT TTTAATCCTA GCGCTTAGGA GGCAGAAGCA GGCAGAGCTC
  TGAGTTTAAG GCCAGCCTGT TCTACAGAAT GTTTCCAGTA CAGCCAAAGC TAACCATGTC
  TCAAAAAAAA ACCAAACCAA ACCAAATTAA GTGAAATGAA AAAAACCACC ACCACCACCA
  M
  CACCAACAAC AACAACAAAA AAAACCCTGA ATTAAGCCAG GCCTATACCA GTACTCCAGA
  GGCAGAGGCC ATAGGATCAC TGCAAAGTTG AGGCCAGCCT GGTCTCTCCC TCCCCACCTC
  CCAAATCTGA ACTAAATTTC CAAGAAATGT TAACTGTGAG GAATAAAACT AGAATCATGG
  CTGCATATTG TTCATATTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148157714	ENSMUSSNP5135912	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52173958					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55796696 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm28037	predicted gene, 28037			within coordinates
Rr517159	regulatory region 517159			1226 bp distal
Tssr138803	transcription start site region 138803			1126 bp downstream
Tssr141546	transcription start site region 141546			1808 bp upstream
Tssr141547	transcription start site region 141547			1726 bp upstream
Zbtb11	zinc finger and BTB domain containing 11			Intron
				Noncoding-Transcript-Variant
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1			1716 bp upstream