rs52173665 SNP Detail

Summary

• ID
  rs52173665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150131136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTATCTCAAA AGGATTCTTT GAAAGTCTCC AGAGGGGTTT
  AATATGATAC CTCGTGTTTG TTACAAGAGA CTGCATGGGT CAAAGGGGTG TGTGAGTGTG
  Y
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC CCGTGCCCAA GGTCACACAG
  GGAGTCAGAA GGGGACCCCA CTTTGACTGT CCACAAAACC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148045830	ENSMUSSNP466186	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52173665					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150131136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	1420 bp proximal
Gm13067	predicted gene 13067	1516 bp upstream
Gm69230	predicted gene, 69230	447 bp downstream
Rr377414	regulatory region 377414	1650 bp upstream
Rr605155	regulatory region 605155	1026 bp proximal
Rr605156	regulatory region 605156	1835 bp proximal
Tssr40363	transcription start site region 40363	1512 bp upstream
Tssr40364	transcription start site region 40364	1599 bp upstream