rs52169724 SNP Detail

Summary

• ID
  rs52169724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146800024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATGTCCT CCTGTTTGAC TAAAAGGATG ACTCATCTAT
  CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT GTCTGTCTGT
  Y
  TGTTTTTGAG AAGAACTTCT CCAACTGCAT ATCTTTAGGG CTTTTTCCTA AATCTCATAC
  AAAGAGACCT GGGTGCAGTA GCTCACCCGT GCAGGCCTAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	NOD/ShiLtJ	WSB/EiJ
ss61096392	NES16600786	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	NOD/ShiLtJ	WSB/EiJ
rs52169724					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096392	NES16600786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146800024 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Gm65947	predicted gene, 65947	1500 bp downstream
Rr375880	regulatory region 375880	373 bp downstream
Rr587122	regulatory region 587122	1722 bp distal
Rr587123	regulatory region 587123	811 bp distal
Rr587124	regulatory region 587124	1494 bp distal