rs52169270 SNP Detail

Summary

• ID
  rs52169270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144038153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGGAAAGAGA GGCCCTTTGG ACTTGCAAAC TTTATATGCC
  CCAGTACAGG GGAACGCCAG GGCCAAAAGG GGGAGTGGGT GGGTAGGGGA TTTGGGGGGT
  R
  GGTATGGGGG ACTTTTGGGA TAGCATTGGA AATGTAAACG AGGAAAATAC CTAATTTAAA
  AAAAAAAAAA AAAGAATGCT AAAGAGGAGC CAGGTGTGGT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147820561	ENSMUSSNP5793461	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52169270					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144038153 () rs orientation: forward

Symbol	Name	Function Class
Rr377339	regulatory region 377339	817 bp upstream
Rr604223	regulatory region 604223	1282 bp distal
Rr604224	regulatory region 604224	988 bp distal