rs52168541 SNP Detail

Summary

• ID
  rs52168541
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148024024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA GCTGTCTTCA GACATTCCAG
  A
  AAACGGCATC AGATTTCATT ACGGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147987489	ENSMUSSNP1869357	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321415867	CHEV_4_147313676	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52168541					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148024024 () rs orientation: forward

Symbol	Name	Function Class
2510039O18Rik	RIKEN cDNA 2510039O18 gene	mRNA-UTR
Cpgi15285	CpG island 15285	1080 bp proximal
Rr377387	regulatory region 377387	1553 bp downstream
Rr398852	regulatory region 398852	1139 bp upstream
Rr604527	regulatory region 604527	1745 bp distal
Rr604528	regulatory region 604528	478 bp distal
Rr604529	regulatory region 604529	838 bp proximal
Rr604530	regulatory region 604530	1285 bp proximal
Tssr40235	transcription start site region 40235	1292 bp upstream
Tssr40236	transcription start site region 40236	1359 bp upstream