rs52167936 SNP Detail

Summary

• ID
  rs52167936
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38539273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG CCCAGCCAGT CCTCTCAGGC
  T
  CCACGCGCCA CGGCCCCGCC CCGCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320719956	CHEV_3_38384046	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52167936					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38539273 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	280 bp upstream
Cpgi13104	CpG island 13104	within coordinates
Gm65619	predicted gene, 65619	within coordinates
Rr397648	regulatory region 397648	74 bp downstream
Rr575675	regulatory region 575675	878 bp distal
Rr575676	regulatory region 575676	9 bp distal
Rr575677	regulatory region 575677	within coordinates
Tssr28929	transcription start site region 28929	71 bp upstream
Tssr33057	transcription start site region 33057	333 bp upstream
Tssr33058	transcription start site region 33058	302 bp upstream
Tssr33059	transcription start site region 33059	260 bp upstream