rs52166518 SNP Detail

Summary

• ID
  rs52166518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130550859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGAAG TCGCTGTCTT
  CAGCAGCCGA ACAATTTCTG CTAGTCCCCA GGGAACAGTC CTAACTGTAA ACCCTGGCAT
  GATAAAACAC CTTAAAATGC AGGTCACGAG GAGGGTTCTC AGTGAAGACT TTCTGAACGG
  CGACCAGTGT TTGTGTTAAA TGTTCTCTTG GGCATCAACA GCCTCTAACA GAATCTCCCA
  Y
  GCCAGAGGAC ATACCAATCA GAAATAGGGC CCTCCTATAA CATAAAAACT AACAACCAAG
  CAAACAAACA AACAAAACAC CCTAAAGCAA ACCCCTTAGT GACTGCTGAG TCAGCATTCA
  GTTATTTCTT TTTCTTGGAT GAACAAAGCT CACATACCAA CAAAGAGCCA GCATGGGTGG
  TTCTAGACCC AGGCCGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080262	NES16598298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52166518					SNP	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080262	NES16598298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130550859 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43524	predicted gene 43524	251 bp upstream
Gm65129	predicted gene, 65129	1379 bp downstream
Rr585206	regulatory region 585206	198 bp proximal