rs52166468 SNP Detail

Summary

• ID
  rs52166468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152022203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggaaggaag gaagaaagaa agaaagaaag
  aaagaaagaa agaaagaaag aaagaaagaa agaaagaaag aaagagggaa agggaaaggg
  aaagggaaag ggaaagggaa agggaaaggg aaagggaaag ggaaagggaa agggaaaggg
  R
  aagaaaACgg ggagggcctc aggagtccag tgcttgttgt acaggcttgg gtttggatcc
  cagcccccac ataaaagcca ggtgtggtga cgtgtgcgta taacccttgc acgaggggaa
  aggagacagg tagatctcga gagctcactg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028630	CHEV_3_151979530	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52166468					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss136102269	ENSMUSSNP6634603	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152022203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			1298 bp distal
Rr587524	regulatory region 587524			338 bp distal
Rr587525	regulatory region 587525			734 bp distal
Rr587526	regulatory region 587526			690 bp distal
Rr587527	regulatory region 587527			271 bp distal
Rr587528	regulatory region 587528			within coordinates