rs52165800 SNP Detail

Summary

• ID
  rs52165800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153366062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTAACA CTGAGAGTTG
  GGACCTAGGA AACACCGTAG CAAGTTGTTC TAAGAACAGG GTCTTGAGTA TGAGCTCAAG
  GATGCCAGAC TTGATTCACA GACATCACTG AGCCAAGGGA GCTTCTCTGA GAAATGTCTG
  TGAGAGGCAG GGCAGAAAAA GGGAGCCATC AGGTTAGCTC CAGCTGGGGT GATTCATCTT
  Y
  GGATGCATAA GACCCCGTAT GGGACAGAAA GGGGATCAGA GGCTGGAGGA GGAGGAGGAG
  GAGGGAGAGG AGGGGGAAGG GGAAGAGGGG AAGAGGAAGA GGAAGAGGAA GGGAAGGAGG
  GGGAGGAGGA AGAACAGAAA AAAGGAGGAG GAGGGGAGGA GGAAGAGGAA GAACAGGAGG
  AAGAGGGGAG GAGGAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110594	ENSMUSSNP3005335	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52165800					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153366062 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			1565 bp distal
Rr587720	regulatory region 587720			1832 bp distal
Rr587721	regulatory region 587721			286 bp distal
Rr587722	regulatory region 587722			1577 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant