rs52165677 SNP Detail

Summary

• ID
  rs52165677
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32951767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggtaaagtg cgctctgatg aagcatgaga
  acccaaattc aaatccctca gcaccgatat aCATATAAAT GCAAGCAAGA AAGTTAAcac
  acatacatgc acacatgcag gcatgcatgc gcgcgcatgt gcatgcTCTC TCTCTCTCTC
  W
  cacgcacgcg cacacgcaca cgcgcacacg cacacacaca cacacacgAT CTGATGACAA
  ATGAGTGATG GAACCTTTTG CTCACAGAGG TGGAGAGGTC AGCAGGTAGA ACGGTGAACA
  TGACGCTTCG ATCTTACCTG AGGCTGGTGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146163681	ENSMUSSNP3291771	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321072566	CHEV_4_33038742	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52165677					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32951767 () rs orientation: forward

Symbol	Name	Function Class
Ankrd6	ankyrin repeat domain 6	926 bp upstream
Cpgi14106	CpG island 14106	403 bp distal
Cpgi14107	CpG island 14107	within coordinates
Rr590062	regulatory region 590062	952 bp distal
Rr590063	regulatory region 590063	1259 bp distal
Rr590064	regulatory region 590064	436 bp distal
Rr590065	regulatory region 590065	816 bp distal
Tssr41164	transcription start site region 41164	901 bp upstream