rs52165666 SNP Detail

Summary

• ID
  rs52165666
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38866513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATGACTTTAA CTTCTTCATT TCATCATTGG GCCATTCATA
  CAGATGCACT TACACACACA CACACACACA CACACACACA CACACACACA CACACACACA
  C
  GCGCGCGTGC AGCATCAGTA TCGTTTTTTT TGCCTCATAT GTGAAGGGCA GTTCTTGTTT
  TAGGGAGATG ACATTTAGAG GTACTAAAAT AATGATTAGC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss134844494	ENSMUSSNP614966	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52165666					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38866513 () rs orientation: forward

Symbol	Name	Function Class
Gm54204	predicted gene, 54204	within coordinates
Rr575706	regulatory region 575706	510 bp distal