rs52164940 SNP Detail

Summary

• ID
  rs52164940
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154940566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTGGCGGGG GCTCGCGCGC AGTGTGAGCG CCTCCTCCGT
  CCCAGGCGTC CGGGGGAGCG CGCGGGGGAC CGCACCGGAG AGCACGCGCC GCTGCTAGCG
  A
  TGCGCGGCTT CTGCGCGCTG CACGCGGGCG ATGCGCGGCG CGCGCGCGAG GACTTCCAGG
  CCGTGGTGGA GCGCGCGGCG CCACACGCGG GAGGCTGCG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148107623	ENSMUSSNP2682375	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52164940					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154940566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15447	CpG island 15447	within coordinates
Rr606279	regulatory region 606279	within coordinates
Rr606280	regulatory region 606280	271 bp proximal
Rr606281	regulatory region 606281	951 bp proximal
Ttc34	tetratricopeptide repeat domain 34	Coding-NonSynonymous