rs52163970 SNP Detail

Summary

• ID
  rs52163970
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37435262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT GCCCTCATAT GCATATGTGA
  G
  TGTGTACTTA CATATATATG TGTGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134804272	ENSMUSSNP3129830	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320709712	CHEV_3_37280035	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52163970					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37435262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgf2	fibroblast growth factor 2			Intron
				Noncoding-Transcript-Variant
Gm43439	predicted gene 43439			within coordinates
Rr575471	regulatory region 575471			1698 bp distal
Rr575472	regulatory region 575472			348 bp distal
Rr575473	regulatory region 575473			1920 bp proximal