rs52163227 SNP Detail

Summary

• ID
  rs52163227
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148695072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGTGTGCAA GTGTGTGTGC
  S
  TGTGAGTGCG AGTGTGTGTG AGCGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss136066000	ENSMUSSNP3009312	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321017040	CHEV_3_148652400	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52163227					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148695072 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adgrl2	adhesion G protein-coupled receptor L2			Intron
				mRNA-UTR
Cpgi13930	CpG island 13930			within coordinates
Gm43573	predicted gene 43573			within coordinates
Rr587240	regulatory region 587240			1792 bp distal
Rr587241	regulatory region 587241			120 bp distal
Rr587242	regulatory region 587242			within coordinates
Rr587243	regulatory region 587243			1109 bp proximal
Tssr36077	transcription start site region 36077			339 bp upstream
Tssr36078	transcription start site region 36078			329 bp upstream
Tssr36079	transcription start site region 36079			85 bp upstream
Tssr36080	transcription start site region 36080			47 bp upstream
Tssr36081	transcription start site region 36081			24 bp upstream
Tssr36082	transcription start site region 36082			7 bp downstream
Tssr36083	transcription start site region 36083			77 bp downstream
Tssr36084	transcription start site region 36084			96 bp downstream
Tssr36085	transcription start site region 36085			120 bp downstream
Tssr36086	transcription start site region 36086			276 bp downstream
Tssr36087	transcription start site region 36087			550 bp downstream
Tssr36088	transcription start site region 36088			664 bp downstream
Tssr36089	transcription start site region 36089			1083 bp downstream
Tssr36090	transcription start site region 36090			1133 bp downstream