rs52161820 SNP Detail

Summary

• ID
  rs52161820
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105304634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGGAGGGAGG GAGAGAGGGG AAAGGAGAGA TAGAGATAGA
  GATAGAGATA GAGATAGAGA TAGAGATAGA GATAGAGATA GAGATAGAGA TAGAGATAGA
  K
  ATATATATAG AGAGAACCCA AACAGTCGTT TTACACTGAG CCAGACTCCT ACCTACCTGA
  GTGTTGCTAG GAAACTGTTG GGCAGAACCT CAAGGAAATG C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147158796	ENSMUSSNP2246666	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52161820					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105304634 () rs orientation: forward

Symbol	Name	Function Class
Rr596616	regulatory region 596616	1800 bp proximal