rs52159583 SNP Detail

Summary

• ID
  rs52159583
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116763038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TGGACCCCAT TCAAAAAAAA
  M
  AAAAAACAAA AAACAAAAAA CAAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135676644	ENSMUSSNP1479175	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52159583					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116763038 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	519 bp distal
Gm52613	predicted gene, 52613	1376 bp downstream
Palmd	palmdelphin	402 bp upstream
Rr583817	regulatory region 583817	1112 bp distal
Rr583818	regulatory region 583818	71 bp distal
Tssr35360	transcription start site region 35360	838 bp upstream
Tssr35361	transcription start site region 35361	821 bp upstream
Tssr35362	transcription start site region 35362	756 bp upstream
Tssr35363	transcription start site region 35363	697 bp upstream
Tssr35364	transcription start site region 35364	621 bp upstream
Tssr35365	transcription start site region 35365	600 bp upstream
Tssr35366	transcription start site region 35366	574 bp upstream
Tssr35367	transcription start site region 35367	555 bp upstream
Tssr35368	transcription start site region 35368	451 bp upstream
Tssr35369	transcription start site region 35369	385 bp upstream
Tssr35370	transcription start site region 35370	362 bp upstream
Tssr35371	transcription start site region 35371	125 bp downstream