rs52155576 SNP Detail

Summary

• ID
  rs52155576
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCTCCA GAGCAGCATG
  TCTCTGAAGT GTTCTGTATG GACTTCTGTC TGCAGGCTGG AAACGGCCAC AGCAGTTGCT
  GACTGCAGTG TGTAGCATCT TGGAGACCTA GACAGGGTTG AGTTCCCTCT GCCAGCAGTA
  GTTTAGGAAG ATCTCTTCCC TTGCCAGAGG CAGTAGCTTC GAGCACAGGG CCCTAGTTCT
  M
  CCGAGAGTCA GTCCCTGGAA TCCTGAAGGC AGCCATCTCT TCCTCTTCCT CTTCCTCGTC
  TTCCCCCTTC TCCTCCTTCT TTTCCTCCTC CTCAGAATCC GGGAGTGTCC TGCATTCCAA
  AGCCCAAATT TGCTGGGCAC CAGATGGGTC CCAATTGTTG ATATTTTCTT TCTGCTGTTG
  TTTCCCCATG TTTGTCTCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135873155	ENSMUSSNP3232475	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320957517	CHEV_3_127557242	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52155576					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647973 () rs orientation: forward

Symbol	Name	Function Class
Rr584884	regulatory region 584884	1025 bp distal
Rr584885	regulatory region 584885	155 bp distal
Rr584886	regulatory region 584886	791 bp distal