rs52154811 SNP Detail

Summary

• ID
  rs52154811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52169765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGAGG AGGAGGAGGA
  GGAGGAGGAG AAAGGAAGGA AGGAAGAAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA
  AAGGGAGAAA GAAAGAAAGT AAGAAAGAAA GAAAGAAAGA AAGAGAGAAA GAGAGAAAGA
  GAGAAAGAGA GAAAGAGAGA AAGAGAGAAA GAGAAAGAAA AAGGAAAGGC CAGGAAGGAC
  R
  TGAAGCCAGC CAGCCTGGAA GAGCTGACTA CTGAAGCTGT CTCAACAGCC AAGCACTAAT
  GACTGGATAG GCTCTACTTC ATTTCTGTAT ACAAACCCAA AATAATCATG ATCGTTGCTG
  GTTACATTGT GTCTAGGCAT CTTTTATTAA CCTAAACTGA ACTAGTTTTC TTTTAAAAAA
  AAAAATTTAT TTTTGCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410249	NES15916345	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52154811					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410249	NES15916345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52169765 () rs orientation: forward

Symbol	Name	Function Class
Rr397665	regulatory region 397665	43 bp upstream
Rr576485	regulatory region 576485	10 bp proximal
Rr576486	regulatory region 576486	236 bp proximal
Rr576487	regulatory region 576487	1475 bp proximal