rs52153521 SNP Detail

Summary

• ID
  rs52153521
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156577444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAT TAATTAATTA TAATAATAAT
  W
  ATTATTATTC TTTAATTCTT TTTAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145804084	ENSMUSSNP1955987	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320072670	CHEV_1_158680005	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52153521					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156577444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	1192 bp distal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	909 bp distal
Rr421243	regulatory region 421243	107 bp distal
Rr421244	regulatory region 421244	32 bp proximal
Rr421245	regulatory region 421245	1884 bp proximal