rs52151000 SNP Detail

Summary

• ID
  rs52151000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148251292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCGTTGTT CCTATCCCTC TCTGGAGCAG TTTGGCAGTG
  ACGCCACCAG GTCTGGATAG CATTCTCTTG GGCTTAGAGA TGAAGGCTGT GGAGTGGCGC
  R
  CGCACACACA CACACACACA CACACACGCA CACACACGCA CACGCGCACG CGCACACGCG
  CGCGCGCACA CACACACGCG CGCGCGCACA CACACACGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147994793	ENSMUSSNP1620661	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321417765	CHEV_4_147540944	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52151000					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148251292 () rs orientation: forward

Symbol	Name	Function Class
Fbxo2	F-box protein 2	411 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	412 bp proximal
Rr604612	regulatory region 604612	1385 bp proximal
Rr604613	regulatory region 604613	1417 bp proximal
Rr604614	regulatory region 604614	1642 bp proximal
Tssr44601	transcription start site region 44601	462 bp upstream