rs52149464 SNP Detail

Summary

• ID
  rs52149464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGATTCA GTGGTTAAGA
  GCACTGGCTG CTCTTCCACA GGACCCAGGT TCAATTCCCA GCACCCACAT AGCTGCTTGC
  AATTGCCTGA AACCCCAGAC CCAGGAGATC CGAAGCCTCT TCTGATCATT GAGGGCACCA
  GGCACACATG TGGTGTGCAT ACACACATGC AGGCAAAACA CTCACTCACA TGCCTATATG
  Y
  ACATGCATGC ACACACATGC ACACTCACAT GCACACGTGC ACACACGAGC ATCCACAGGC
  ACATGCACAC ATGCTTGTGT GCACATACCA GGCATGGTGA AGAATACTAT AATCCCAACA
  CTGGGTAGAT GGAGACAGCC AGCCTAGCCT TGCGGGTGAA TCCTGGGTTC CAGTGAGAGA
  CCTTGCAGCA AAACTCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147553118	ENSMUSSNP6161852	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52149464					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621708 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	997 bp upstream
Rr602181	regulatory region 602181	1248 bp distal
Rr602182	regulatory region 602182	932 bp distal
Rr602183	regulatory region 602183	594 bp proximal
Rr602184	regulatory region 602184	1008 bp proximal
Rr602185	regulatory region 602185	1574 bp proximal
Tssr39650	transcription start site region 39650	783 bp upstream
Tssr39651	transcription start site region 39651	987 bp upstream
Tssr39652	transcription start site region 39652	1017 bp upstream