rs52149167 SNP Detail

Summary

• ID
  rs52149167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17674245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGAATGAAAA AAAAGCCAGA AAGACAGAAA GAAAGAAAGA
  AAGAAAGAAA GAAAGAAAGA CAGACAGACA GACAGACAGA CAGAAAGAAA GAAAAGAAAG
  R
  AAGAAAGGAA GAAAAAGAAA GAAAAAGAAC TGTCTTCTAG TAATGTCAGA TGCTTCAGCC
  ATAAAGTCTC ACCAGCATGA CTGCCTAAAC ACTAGCCAAG C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133020134	ENSMUSSNP132489	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52149167					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17674245 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	1202 bp upstream
Rr626829	regulatory region 626829	1045 bp proximal
Rr626830	regulatory region 626830	1328 bp proximal