rs52148891 SNP Detail

Summary

• ID
  rs52148891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135835546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTATTGC CTGCTGTCTC
  CAGAAAAATT CTTAGTCTTT TGTTTGTTTG TTTGTTTGTT TGTTTTTGTT TTTGTTTTTT
  TCGAGACAGA GTTTCTCTGT ATATCTCTGG CTGTCCTAGA ACTCACTTTG TAGACCAGGC
  TGGCCTTGAA CTCAGAAATC TGCCTGCCTC TGCCTCCCGA GTGCTAGGCT TAAAGGCGTG
  Y
  GCCACCACGC CTGGCCTTAC TTGGTTTGGT TTTTTTTTTT TTAAGTTTTT TCAATAATTA
  TATTTTAAGT CCTCTGCGTC TGTGTGCATG AGCGTGCTCA CGCACACGCA TGTGAGAACG
  TGTGCTCACA TACATATGCC ACATGTGTAA GGATCCCTAT GGAGGCCAGA GGTATCAGAC
  CCCATGGAGT TGCTGGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147558539	ENSMUSSNP700970	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52148891					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135835546 () rs orientation: forward

Symbol	Name	Function Class
Rr602271	regulatory region 602271	701 bp distal
Rr602272	regulatory region 602272	901 bp distal
Rr602273	regulatory region 602273	1684 bp proximal