rs52148338 SNP Detail

Summary

• ID
  rs52148338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151809090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCCAT CCCCATGTGT
  CAGTGTGTTT GTGTGTGTCA GTGTCTATGT GTCTGTATGT CGTGTGTCAT TGTGTCTGTG
  TGTGTCAGTG TGTGTGTCTG TATGTCTGTG TACCTGTATG TCTGTGTGTG TCAAGTGTGT
  GTGTGTGTGT GTGTGTATGT GTGTGTGTGT GTATCAGTGT GTCTTTGTGT GTCTCATGTG
  Y
  GACATATCTG TGTGGAGGTC AGAGGCCGAC ATGAAGTGCT CTCCTCAATT GTTCTCCTTT
  ATAGTTTTCA AGTCAGCGTC TCTCCTTGAG TCTGGAGCTT ACTGATTCAG CTCGCAAACA
  CAAGGGAGCC TCCAGTCTCC ACCTCCCCCT GCTGGGATCA TCAGTGTGTG TGAGTGTGTA
  CATGGGGAAG TGCCAGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136100778	ENSMUSSNP7121615	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321028026	CHEV_3_151766417	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52148338					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151809090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			1975 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			608 bp downstream
Rr587451	regulatory region 587451			1782 bp distal
Rr587452	regulatory region 587452			1346 bp proximal