rs52147619 SNP Detail

Summary

• ID
  rs52147619
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148218083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATGTGCCTAG CATTCAGGAT CTGATACCTT GGTTGGGGTC
  TGAAATCTGG TGCTGAAAAA TAAAATCTGT AAGTGTGCCG GGATTTCAGT TCACATTTCT
  C
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTTTC TCTCTCTTTC TCTCTCTCTT TCTCTCTCTC T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147923796	ENSMUSSNP5154587	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52147619					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148218083 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	167 bp downstream
Rr566886	regulatory region 566886	1921 bp distal
Rr566887	regulatory region 566887	56 bp distal
Rr566888	regulatory region 566888	632 bp distal
Rr566889	regulatory region 566889	251 bp distal