rs52147529 SNP Detail

Summary

• ID
  rs52147529
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135750860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGACCTC TGCACACTCA
  TCCTGGCATT CTGGCACATA TGAATCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCAC ACACACACAC ACACACACAC ACACACACAT TAAATGGAAT ATAAGAAAAG
  AAGGGAAACA AGAAAGGAAT GAAGAAAGAA AGGAGACAAG TGCTGTCGTG GTGGTGCACG
  M
  CTGTAATCCC AACACTCGGG AGGCAGAGGC AGGCAGATTT CTGAGTTCGA GGCCAGCCTG
  GTCTACAGAG TGAATTCCAG GACAGCCAGG GCTATACAGA GAAACCCTGT GTCGGAAAGA
  AAGAAAGGAA GAAAGAAAGA AAGGAAGGAA GGAAGGAAGA AAGAAAGAAA GAAAGAAAGA
  AAGAAAGAAA GAAAGAAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147556013	ENSMUSSNP3645589	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52147529					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135750860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	1435 bp distal
Eloa	elongin A	1900 bp upstream
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	1577 bp downstream
Rr602239	regulatory region 602239	1797 bp distal
Rr602240	regulatory region 602240	1538 bp distal
Rr602241	regulatory region 602241	1348 bp distal
Rr602242	regulatory region 602242	1953 bp proximal
Tssr44023	transcription start site region 44023	1884 bp upstream
Tssr44024	transcription start site region 44024	1855 bp upstream
Tssr44025	transcription start site region 44025	1813 bp upstream