rs52147257 SNP Detail

Summary

• ID
  rs52147257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95877656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgagcccc agggacctgc ctgtctgcac
  ctccctagtg ctgggattac agcaggcttc tatactgggt gttttctttt catttcactt
  ttatgtgtaa gggtgttttg ttgcatgtat gtatgtatgc atgcatgcat gcatgtatgt
  R
  tgtgtgtgta tgtatgtatg tatgtatgta tgtatgtata tgcacccaca tacatgtttg
  gtgcccacag aggttagaag acagcattga atgccctgga actggagttc caaatggttg
  tgaatcacca tgtatgtgtt ggaaatcaaa                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135513290	ENSMUSSNP711953	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320841288	CHEV_3_95774267	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52147257					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95877656 () rs orientation: forward

Symbol	Name	Function Class
Rr397846	regulatory region 397846	1837 bp upstream
Rr581108	regulatory region 581108	1663 bp distal
Rr581109	regulatory region 581109	363 bp proximal
Rr581110	regulatory region 581110	1757 bp proximal