rs52145054 SNP Detail

Summary

• ID
  rs52145054
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108712267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGATCAACA TCAAGCAAGT GAACAGGAGA AAAGCAAGCA
  AGCAAGCAAG CAAGCAAGCC AAGCAAGCAA GCAAGCAAGC AAACAAGCCA AGCAAGCAAA
  S
  CCACCATGTG CAATCAAGGC CCATGCCATG AAAGTGACTT GTTCTGATTT AGTGGACTTC
  TCTGGGTACC AAAGGAGAAT GAACTAGAGA AAAATGAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133508225	ENSMUSSNP5958637	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52145054					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108712267 () rs orientation: forward

Symbol	Name	Function Class
Rr636189	regulatory region 636189	696 bp proximal
Rr636190	regulatory region 636190	1022 bp proximal