rs52144491 SNP Detail

Summary

• ID
  rs52144491
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132651911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTCTCC ATCCATGAAA
  CAAGCCAAAT TCAAGCCAGA TTACATTATA TTAAATGGAG GTTTATTGGG CTCTCTGGCA
  AGTTCACTGG CCCCAAGGAT TAAGGCCAGG GGAGTCACCA TGAGGGCAAA GGTCAGGGGA
  GAGAAAGAGG AAAAATGGTG AGCAGAGAAA GAAGAGAAGG AGGAGGGGAG GAGGAGGAGG
  A
  AGGAGGAGAG GGAGGGAGGG AGAGAGAGAG AGAGAGAGAG AACACAAGAG AACAAAATGT
  GCCTCTGGAG AAGGGCAGCC TAGCCCCTGG GCTGGAAAGT TCAGGATTGG GGGCAGGGTG
  TGCCAGATAG GGACTGAGGG ATGCTGGGAG AACCTGGAGG CCAGGTCTGC TTTGATCTGT
  AAAATGTGCA CCTCAGTTCC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147479356	ENSMUSSNP323942	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52144491					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132651911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	1390 bp distal
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1620 bp downstream
Rr601112	regulatory region 601112	1552 bp distal
Rr601114	regulatory region 601114	1851 bp distal
Tssr43729	transcription start site region 43729	1999 bp upstream
Tssr43730	transcription start site region 43730	1987 bp upstream
Tssr43731	transcription start site region 43731	1974 bp upstream
Tssr43732	transcription start site region 43732	1969 bp upstream