rs52140688 SNP Detail

Summary

• ID
  rs52140688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152722303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTTGCA TGTTGCGCTT
  GGTGGTTTTG GTTTCCTTCT GTGTTTCTGA AAAGCTTTAA AGGTGAACAC GAGTGTCCAT
  GGCTCAAACC TTTTCCTGTT TGGCCGATTT AAATTCCTCC CTCACTCCAC TTACACACCC
  ATGTGACTGA ATATACAAGC GACAGCCTTG TTAGAGGGAG AGAGGGGAGG GTGAGGGGAC
  R
  AGGGAGAGCG GGTGGCAGAG AGAGCAGAAT GCCCAAGGCT AGCCCCTATG CATCCTCTTC
  ACCCACAGGA GAACTTGGCT GCTCCTAACA AAATCTTGAA ACTCACAGAA CAATCTTGAA
  AGTGACTTCC TAGCAGGAAT AGAACTTCCT GTTGCATTAG GCCATGACGT TTGGCACCTG
  GTGTGGGTGA CTGTATTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136105620	ENSMUSSNP4896410	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321029579	CHEV_3_152679630	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52140688					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152722303 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	1393 bp proximal