rs52137143 SNP Detail

Summary

• ID
  rs52137143
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72282965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCA CAGTGCATGT GCCTAAGTGG
  C
  CACTTACCTA TATAAGTGGC ACCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321821408	CHEV_6_72255975	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52137143					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72282965 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	1351 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57078	transcription start site region 57078	1667 bp downstream
Tssr57079	transcription start site region 57079	1651 bp downstream
Tssr57080	transcription start site region 57080	1358 bp downstream
Tssr57081	transcription start site region 57081	1336 bp downstream
Tssr57082	transcription start site region 57082	934 bp downstream
Tssr57083	transcription start site region 57083	893 bp downstream
Tssr57084	transcription start site region 57084	321 bp downstream
Tssr57085	transcription start site region 57085	84 bp downstream
Tssr57086	transcription start site region 57086	39 bp downstream
Tssr57087	transcription start site region 57087	4 bp downstream
Tssr57088	transcription start site region 57088	within coordinates
Tssr57089	transcription start site region 57089	800 bp upstream
Tssr57090	transcription start site region 57090	853 bp upstream
Tssr57091	transcription start site region 57091	927 bp upstream
Tssr57092	transcription start site region 57092	1157 bp upstream