rs52136874 SNP Detail

Summary

• ID
  rs52136874
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149220571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAAGCTG CCAAGTGAAA ACAGATGATG GCCGCTTGGG
  TGCTCACAGC TGGGCTCTAG CGATGGTTCT AAAGGTTCTG AATTTCTTTT TTTTTTTTTT
  W
  AAGATTTATT TATTTATTAT ATGTAAGTAC ACTGTAGCTG TCTTCAGACA CTCCAGAAGA
  GGGAGTCAGA TCTTGTTACA GATGGTTGTG AGCCACCAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148028499	ENSMUSSNP1568746	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321424998	CHEV_4_148510223	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52136874					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149220571 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	Intron
Cpgi15320	CpG island 15320	861 bp proximal
Rr398863	regulatory region 398863	1391 bp upstream
Rr604839	regulatory region 604839	135 bp proximal
Rr604840	regulatory region 604840	1445 bp proximal
Rr604841	regulatory region 604841	1499 bp proximal
Tssr44623	transcription start site region 44623	1422 bp downstream
Tssr44624	transcription start site region 44624	1485 bp downstream