rs52136360 SNP Detail

Summary

• ID
  rs52136360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:98780526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGGCTT GCTAAAAGAG
  ATAAACATGG CATCTGTTTT CCTGGCATTT AAATTTATTC AGAGTTTGGA GCTGCATGAG
  GCCAGCCTTG TTTGCAGTCC CCAGAACACA CACACACACA TGCACACACA CACATATGCA
  CAAAACCTTA GGGAGACAAG TATGTATGTC ATGGACAGCT TCAAATTAAC CAGCGGGTTC
  R
  TCCCGTTGAG GTAGAACCTA GGAAGTTGGC CGCTGGTGGC CGGTGTTCCT AAGGCTCTGC
  TTCACTCTGG TTTGTTTGGT TTTTGTTTTT TGTTTTTTCC AAGACAGGGT TTCTCTGTGT
  AGCCCTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG GCCTCGAACT CTGCTTCTGC
  CTCCCGAGTG CTGGAATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63623354	NES17046305	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52136360					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63623354	NES17046305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98780526 () rs orientation: forward

Symbol	Name	Function Class
Rhebl1	Ras homolog enriched in brain like 1	Intron
Rr404611	regulatory region 404611	1050 bp downstream
Rr509205	regulatory region 509205	675 bp distal
Rr509206	regulatory region 509206	829 bp proximal
Tssr136315	transcription start site region 136315	1405 bp upstream
Tssr136316	transcription start site region 136316	1329 bp upstream
Tssr136317	transcription start site region 136317	1264 bp upstream
Tssr136318	transcription start site region 136318	1235 bp upstream