rs52135780 SNP Detail

Summary

• ID
  rs52135780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108807511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGTATATG TATACGTCAG CCTTTGTATA TGTTGAAAAA
  CAAAAAACAA AACAACAACG ACAAAACCAA AGCCTTCCTA CTTTATTTCA GCAGTGTGGG
  K
  GAATTGAACA CACGAAGTTC TTTATAGCTG AGCTAAATTT CAGTCTTTTT TTTTTTCCTT
  TTTTTTTCTT TTTTTTTTTT TTGTTTTTCG AGACAGGGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133510112	ENSMUSSNP6718925	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52135780					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108807511 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9430088B20Rik	RIKEN cDNA 9430088B20 gene			1296 bp upstream
Cpgi17816	CpG island 17816			909 bp distal
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr399823	regulatory region 399823			1913 bp downstream
Rr636214	regulatory region 636214			1866 bp distal
Rr636215	regulatory region 636215			1380 bp distal
Rr636216	regulatory region 636216			1220 bp proximal
Tssr58101	transcription start site region 58101			1992 bp downstream
Tssr58102	transcription start site region 58102			1985 bp downstream
Tssr58103	transcription start site region 58103			1946 bp downstream
Tssr58104	transcription start site region 58104			1934 bp downstream
Tssr58105	transcription start site region 58105			1829 bp downstream
Tssr58106	transcription start site region 58106			1806 bp downstream
Tssr58107	transcription start site region 58107			1406 bp downstream