rs52133376 SNP Detail

Summary

• ID
  rs52133376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148218074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCGGCA GAAGAGGAAG
  TGATACTTCA CAGGCCATGT TCCTCGCTGG AACACCTCTT CGGTTAAATC GCTGCCATGG
  GAGCTGGGGA CTTTACTCAG CAGCAGAGCA TGTGCCTAGC ATTCAGGATC TGATACCTTG
  GTTGGGGTCT GAAATCTGGT GCTGAAAAAT AAAATCTGTA AGTGTGCCGG GATTTCAGTT
  M
  ACATTTCTTT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTTTCT CTCTCTTTCT CTCTCTCTTT CTCTCTCTCT CTCTCTCTCT
  CTATGTCTCT ATGTCTCTGT CTGTCTCTCT GTCTCTGTCT CTGTCTCTCT GTCTCTGTCT
  CTGTCTCTCT CTCTCTCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147923791	ENSMUSSNP5108013	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52133376					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148218074 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	176 bp downstream
Rr566886	regulatory region 566886	1912 bp distal
Rr566887	regulatory region 566887	47 bp distal
Rr566888	regulatory region 566888	623 bp distal
Rr566889	regulatory region 566889	242 bp distal