rs52130646 SNP Detail

Summary

• ID
  rs52130646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133963622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACCAACTG TTGGTGTTAG ACGACAACCT CTGTGATTCA
  GTTCTGTCCT TCCATCATGT GTTATAGAGA TTGCACTCAG GGCAACAGAC ACACAGCAAG
  Y
  ATTTTTACCA GCTCATCCAC CTCAGCAGCC TTAGCATTGG TTCTTCTTCT TCTTCTTCCT
  CCTCCTCCTC CTCCTCTTCT TCCTCCTCTT CCTTTTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321975827	CHEV_6_133936677	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52130646					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133963622 () rs orientation: forward

Symbol	Name	Function Class
D6Mit290	DNA segment, Chr 6, Massachusetts Institute of Technology 290	71 bp distal
Rr380154	regulatory region 380154	within coordinates
Rr639549	regulatory region 639549	1303 bp distal